The tools available at the NVI
==============================

At the NVI we use many different tools. This section is where we can document
various tools which we use.

Conda
-------

.. toctree::
    :maxdepth: 1

    Setting up Conda <01-setting_up_conda.md>
    Installing software using Conda <02-installing_software_using_conda.md>




SAGA pipelines
--------------

.. toctree::
    :maxdepth: 1

    SAGA Pipelines <03-saga_pipelines.md>


VigasP
--------------

.. toctree::
    :maxdepth: 1


   Overview <vigasp/01-overview.md>
   User Data Management <vigasp/02-user_data_management.md>
   Pipelines <vigasp/03-pipelines.md>
   Linelist <vigasp/04-linelist.md>
   Data Transfer <vigasp/05-data_transfer.md>
   Upload to NCBI<vigasp/06-uploading_to_ncbi.md>
   Others <vigasp/07-others.md>